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RNA Structure Prediction Including Pseudoknots Based on Stochastic Multiple Context-Free Grammar

RNA Structure Prediction Including Pseudoknots Based on Stochastic Multiple Context-Free Grammar

This video was recorded at Workshop on Probabilistic Modeling and Machine Learning in Structural and Systems Biology (PMSB), Tuusula 2006. Several grammars have been proposed for modeling RNA pseudoknotted structure. In this paper, we focus on multiple contextfree grammars (MCFGs), which are natural extension of context-free grammars and can represent pseudoknots, and extend a specific subclass of MCFGs to a probabilistic model called SMCFG.... Show More

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